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Title: Zcam gap fraction at Bouldin Corn - 2021, 2022, 2023
Date:2021-05-30 - 2022-08-15
Data File: BC_zcam_2021.csv
BC_zcam_2022.csv
BC_DailyGCCNDVI_2023.csv
BC_DailyZcam_2023.csv
Refers to:BC

2021

Corn was planted around 2021-05-03 (DOY123) and small sprouts were seen a week later on 2021-05-10 (DOY130). The zcam data starts around 3 weeks later at the end of May. Corn was harvested in mid October.

 

Figure 1.

 

Figure 2.

 

Figure 3.

 

Figure 4.

 

2022

Corn was planted around 2021-05-07 (DOY127) and small sprouts were seen about a week later.

 

Figure 5.

 

Figure 6.

 

Figure 7.

 

2023

I analyzed 8 times per day, 4 from dawn and 4 from dusk: 04:45, 05:15, 05:45, 06:15, 17:45, 18:15, 18:45, and 19:15. The color bar on the right represents hhmm of each point. 

Lodi data from https://www.timeanddate.com/sun/usa/lodi Sunrise Sunset
June 29, 2023 5:44 20:32
August 24, 2023 6:27 19:46

ZC1 starts the growing season with a gap fraction around 0.45, while ZC2 starts the season with a lower gap fraction around 0.35. ZC1 is placed in between corn rows while ZC2 is place inline with the corn rows, so ZC1 has more sky in its view. However by the end of July when the canopy is pretty much filled in, ZC1 and ZC2 have similar gap fraction values.

The color balance on ZC1s purple-ish, but that probably doesn't affect the light vs. dark separation in the script that calculation gap fraction from zcams.

View from an upward looking camera in a corn field View from upward looking camera placed inline with the corn row

Figure: (L) Photo from ZC1, 2023-06-39 04:45. (R) Photo from ZC2, 2023-06-39 04:45.

ZC1 timeseries

Figure: Timeseries of gap fraction calculated from Zcam 1. Purple symbols are from dawn photos, and yellow symbols are from dusk photos. There's some noise throughout July. I'm not sure why. Mean and median differ slightly when it's noisier in July, but are overall pretty similar. 

ZC2 timeseries

Figure: Timeseries of gap fraction calculated from Zcam 2. Purple symbols are from dawn photos, and yellow symbols are from dusk photos. Daily mean and median are very similar through the whole time series. There's a 11 days of data missing when the camera lost its clock, but by that time the canopy has pretty much finished filling in, so we're not losing much information about canopy development.

 

I took the daily average from each camera to calculate an overall daily average value for gap fraction. I also tried a 3-day running mean, but it doesn't make a big difference.

Timeseries of both zcams at Bouldin Corn

Figure: Timeseries of raw gap fraction calculated from each zcam and the daily average zcam from both cameras. Not much difference between the daily average and the 3-day moving mean of the daily average.

 

Broadband NDVI: Data from datafetch, daily averages using 11:00 to 14:00, inclusive (8 points)

GCC: Data from datafetch, daily averages using 11:15 to 14:15 inclusive (7 points total)

Vegetation height: Data from field measurements using tape measure, measured 10-15 plants during each site visit

Timeseries of gap fraction, NDVI, and GCC from Bouldin Corn in summer 2023 Timeseries of gap fraction and vegetation height from Bouldin Corn in summer 2023