Reports

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Title: West Pond - NDVI (SRS, Planet)
Date:2017-06-06 - 2021-04-26
Data File: WP_NDVI.csv
Refers to:WP,1066703780,2046503378

Various sensors measuring NDVI have been installed across the Delta sites over the last several years. At some sites, the SRS sensors from Decagon/METER have been drifting low, so I wanted to compare them with other NDVI measurements.

  • SRS sensor (Decagon/METER): A pair of photodiodes with cosine correcting Teflon diffuser and hemispherical view. Red band is measured at 650nm and NIR band is measured at 810nm.
  • SR-411 sensor (Apogee): A pair of photodiodes with acrylic diffuser and hemispherical view. Red band is measured at 650nm and NIR band is measured at 810nm.
  • Planet Labs data: L3H (CESTEM) alpha data product. Pixel size is 3m, and there are daily gap-filled images from 2018-2020. Gap fills are done with Planet imagery from the day before and after, combined with daily MODIS data. From the full image, Joe cut out a 730mx730m tile for each site, centered on the tower. Product includes NDVI, GCC, ECI, and the following reflectances: red, NIR, green, blue. For more information, see Box/Biometlab/Remote_Sensing/PlanetLabs/L3H_distribution_lodi_islands_readme.pdf.
  • Broadband NDVI: NDVI calculated using reflected SW and PAR data from the tower, called "broadband" because it uses the broader bands of shortwave and PAR radiation rather than the narrow bands of the SRS and Apogee sensors. See Huemmrich et al., 1999 in Journal of Geophysical Research: Atmospheres and Tittebrand et al., 2009 in Theoretical and Applied Climatology.

For some sites with I also compared GCC with the various NDVI values to see how much GCC values varied year over year. Photos were taken by a variety of cameras: Netcam Stardot cameras (the official camera of the Phenocam Network®), Canon point-and-shoot cameras with custom firmware, or a Raspberry Pi camera.

I used Joe's datafetch tool to calculate daily average mid-day values of NDVI and GCC from the various sensors. Mid-day values included data from 11:00 to 13:00, 5 values a day. I despiked the data in Excel.

  • NDVI = (NIR-Red)/(NIR+Red)
  • GCC = (Green)/(Red + Green + Blue)
  • Broadband NDVI = (rho_NIR-rho_PAR)/(rho_NIR+rho_PAR)
    • rho_NIR= (SWout-PARout)/(SWin-PARin)
    • rho_PAR=(PARout/PARin)
    • Units of both SW and PAR should be in W/m2. Use the conversion 4.6 umol/m2/s = 1 W/m2 to convert the usual PAR units (umol/m2/s) to W/m2.

See reports for other Delta sites here:

Bouldin Alfalfa

Bouldin Corn

East End

East Pond / Sherman Wetland Temp Tower (both sites had same set of SRS sensors)

Mayberry

Sherman Wetland

Twitchell Alfalfa / Sherman Barn (both sites had same set of SRS sensors)

 West Pond

 

Site SRS sensor (incoming/outgoing) Conclusion
West Pond
 sn 1066703780/ sn 2046503378

At West Pond, SRS NDVI data looks ok. No correction needed.

 

Figure 1. West Pond NDVI timeseries. SRS has an NDVI values consistently 0.2-0.3 lower than PL and broadband NDVI.  PL NDVI has higher seasonal maxes than broadband NDVI. Broadband NDVI has a lot of noise in the winter.

 

Figure 2. Individual bands of SRS sensors. No obvious decay.

 

Figure 3. Red reflectance from SRS and PL data. SRS reflectance is about 0.04-0.05 higher than PL reflectance. Seasonality doesn't match: SRS seasonal minimum is in June, whereas PL seasonal minimum is in September. Maybe this is an effect of the pixels included in the PL data.

 

Figure 4. NIR reflectance from SRS and PL data. Although reflectance values are in the same range, seasonality doesn't match in 2018. In 2018, PL reflectances started increasing earlier and reached a seasonal peak earlier in early August, whereas SRS reflectance peaked in late September. 2019 seasonality timing matches better than in 2018.

 

Regression Data

Residuals

Figure 5. Linear regression of SRS NDVI against PL and broadband NDVI. Fits are similar with R2 of 0.85 and 0.91.

 

Figure 6. West Pond GCC and SRS data. SRS and GCC annual patterns seem reasonable. In 2017 and 2018, the GCC peaks around July and NDVI peaks around 2 months later, but in 2020 they both peak in August. In all 3 years, NDVI starts increasing in the spring before GCC.

 

Regression Data

Residuals

Figure 7. Linear regression of SRS NDVI data with GCC_13-15 (average GCC from 13:00-15:00). Best fit is with SRS data R2=0.81. R2 ranges from 0.6

 

Figure 8. Linear regression of SRS NDVI data with GCC_11-13 (average GCC from 11:00-13:00).  Best fit is with PL and SRS data (R2~0.82).